Package nifti :: Module nifticlib
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Module nifticlib

source code

This module provide the all functions and datatypes implemented in the low-level C library libniftiio and the NIfTI-1 header.

At the moment no additional documentation is provided here. Please see the intensively documented source code of the nifti C libs to learn about the capabilities of the library.

Classes [hide private]
  znzptr
  nifti_1_header
  nifti1_extender
  nifti1_extension
  mat44
  mat33
  nifti_image
  nifti_brick_list
  shortArray
  intArray
  uintArray
  floatArray
  doubleArray
Functions [hide private]
 
_swig_setattr_nondynamic(self, class_type, name, value, static=1) source code
call graph 
 
_swig_setattr(self, class_type, name, value) source code
call graph 
 
_swig_getattr(self, class_type, name) source code
 
_swig_repr(self)
repr(x)
source code
Variables [hide private]
  _newclass = 1
  DT_NONE = 0
  DT_UNKNOWN = 0
  DT_BINARY = 1
  DT_UNSIGNED_CHAR = 2
  DT_SIGNED_SHORT = 4
  DT_SIGNED_INT = 8
  DT_FLOAT = 16
  DT_COMPLEX = 32
  DT_DOUBLE = 64
  DT_RGB = 128
  DT_ALL = 255
  DT_UINT8 = 2
  DT_INT16 = 4
  DT_INT32 = 8
  DT_FLOAT32 = 16
  DT_COMPLEX64 = 32
  DT_FLOAT64 = 64
  DT_RGB24 = 128
  DT_INT8 = 256
  DT_UINT16 = 512
  DT_UINT32 = 768
  DT_INT64 = 1024
  DT_UINT64 = 1280
  DT_FLOAT128 = 1536
  DT_COMPLEX128 = 1792
  DT_COMPLEX256 = 2048
  DT_RGBA32 = 2304
  NIFTI_TYPE_UINT8 = 2
  NIFTI_TYPE_INT16 = 4
  NIFTI_TYPE_INT32 = 8
  NIFTI_TYPE_FLOAT32 = 16
  NIFTI_TYPE_COMPLEX64 = 32
  NIFTI_TYPE_FLOAT64 = 64
  NIFTI_TYPE_RGB24 = 128
  NIFTI_TYPE_INT8 = 256
  NIFTI_TYPE_UINT16 = 512
  NIFTI_TYPE_UINT32 = 768
  NIFTI_TYPE_INT64 = 1024
  NIFTI_TYPE_UINT64 = 1280
  NIFTI_TYPE_FLOAT128 = 1536
  NIFTI_TYPE_COMPLEX128 = 1792
  NIFTI_TYPE_COMPLEX256 = 2048
  NIFTI_TYPE_RGBA32 = 2304
  NIFTI_INTENT_NONE = 0
  NIFTI_INTENT_CORREL = 2
  NIFTI_INTENT_TTEST = 3
  NIFTI_INTENT_FTEST = 4
  NIFTI_INTENT_ZSCORE = 5
  NIFTI_INTENT_CHISQ = 6
  NIFTI_INTENT_BETA = 7
  NIFTI_INTENT_BINOM = 8
  NIFTI_INTENT_GAMMA = 9
  NIFTI_INTENT_POISSON = 10
  NIFTI_INTENT_NORMAL = 11
  NIFTI_INTENT_FTEST_NONC = 12
  NIFTI_INTENT_CHISQ_NONC = 13
  NIFTI_INTENT_LOGISTIC = 14
  NIFTI_INTENT_LAPLACE = 15
  NIFTI_INTENT_UNIFORM = 16
  NIFTI_INTENT_TTEST_NONC = 17
  NIFTI_INTENT_WEIBULL = 18
  NIFTI_INTENT_CHI = 19
  NIFTI_INTENT_INVGAUSS = 20
  NIFTI_INTENT_EXTVAL = 21
  NIFTI_INTENT_PVAL = 22
  NIFTI_INTENT_LOGPVAL = 23
  NIFTI_INTENT_LOG10PVAL = 24
  NIFTI_FIRST_STATCODE = 2
  NIFTI_LAST_STATCODE = 24
  NIFTI_INTENT_ESTIMATE = 1001
  NIFTI_INTENT_LABEL = 1002
  NIFTI_INTENT_NEURONAME = 1003
  NIFTI_INTENT_GENMATRIX = 1004
  NIFTI_INTENT_SYMMATRIX = 1005
  NIFTI_INTENT_DISPVECT = 1006
  NIFTI_INTENT_VECTOR = 1007
  NIFTI_INTENT_POINTSET = 1008
  NIFTI_INTENT_TRIANGLE = 1009
  NIFTI_INTENT_QUATERNION = 1010
  NIFTI_INTENT_DIMLESS = 1011
  NIFTI_INTENT_TIME_SERIES = 2001
  NIFTI_INTENT_NODE_INDEX = 2002
  NIFTI_INTENT_RGB_VECTOR = 2003
  NIFTI_INTENT_RGBA_VECTOR = 2004
  NIFTI_INTENT_SHAPE = 2005
  NIFTI_XFORM_UNKNOWN = 0
  NIFTI_XFORM_SCANNER_ANAT = 1
  NIFTI_XFORM_ALIGNED_ANAT = 2
  NIFTI_XFORM_TALAIRACH = 3
  NIFTI_XFORM_MNI_152 = 4
  NIFTI_UNITS_UNKNOWN = 0
  NIFTI_UNITS_METER = 1
  NIFTI_UNITS_MM = 2
  NIFTI_UNITS_MICRON = 3
  NIFTI_UNITS_SEC = 8
  NIFTI_UNITS_MSEC = 16
  NIFTI_UNITS_USEC = 24
  NIFTI_UNITS_HZ = 32
  NIFTI_UNITS_PPM = 40
  NIFTI_UNITS_RADS = 48
  NIFTI_SLICE_UNKNOWN = 0
  NIFTI_SLICE_SEQ_INC = 1
  NIFTI_SLICE_SEQ_DEC = 2
  NIFTI_SLICE_ALT_INC = 3
  NIFTI_SLICE_ALT_DEC = 4
  NIFTI_SLICE_ALT_INC2 = 5
  NIFTI_SLICE_ALT_DEC2 = 6
  a75_transverse_unflipped = 0
  a75_coronal_unflipped = 1
  a75_sagittal_unflipped = 2
  a75_transverse_flipped = 3
  a75_coronal_flipped = 4
  a75_sagittal_flipped = 5
  a75_orient_unknown = 6
  NIFTI_L2R = 1
  NIFTI_R2L = 2
  NIFTI_P2A = 3
  NIFTI_A2P = 4
  NIFTI_I2S = 5
  NIFTI_S2I = 6
  NIFTI_ECODE_IGNORE = 0
  NIFTI_ECODE_DICOM = 2
  NIFTI_ECODE_AFNI = 4
  NIFTI_ECODE_COMMENT = 6
  NIFTI_ECODE_XCEDE = 8
  NIFTI_ECODE_JIMDIMINFO = 10
  NIFTI_ECODE_WORKFLOW_FWDS = 12
  NIFTI_ECODE_FREESURFER = 14
  NIFTI_MAX_ECODE = 14
  NIFTI_FTYPE_ANALYZE = 0
  NIFTI_FTYPE_NIFTI1_1 = 1
  NIFTI_FTYPE_NIFTI1_2 = 2
  NIFTI_FTYPE_ASCII = 3
  NIFTI_MAX_FTYPE = 3

Imports: _nifticlib, new, new_instancemethod, _swig_property, _object, nifti_mat44_to_quatern, nifti_mat44_to_orientation, znzptr_swigregister, znzopen, znzdopen, Xznzclose, znzread, znzwrite, znzseek, znzrewind, znztell, znzputs, znzgets, znzputc, znzgetc, znzprintf, nifti_1_header_swigregister, nifti1_extender_swigregister, nifti1_extension_swigregister, mat44_swigregister, mat33_swigregister, nifti_image_swigregister, nifti_brick_list_swigregister, nifti_datatype_string, nifti_units_string, nifti_intent_string, nifti_xform_string, nifti_slice_string, nifti_orientation_string, nifti_is_inttype, nifti_mat44_inverse, nifti_mat33_inverse, nifti_mat33_polar, nifti_mat33_rownorm, nifti_mat33_colnorm, nifti_mat33_determ, nifti_mat33_mul, nifti_swap_2bytes, nifti_swap_4bytes, nifti_swap_8bytes, nifti_swap_16bytes, nifti_swap_Nbytes, nifti_datatype_from_string, nifti_datatype_to_string, swap_nifti_header, nifti_get_filesize, nifti_image_read_bricks, nifti_image_load_bricks, nifti_free_NBL, nifti_image_read, nifti_image_load, nifti_image_unload, nifti_image_free, nifti_read_collapsed_image, nifti_read_subregion_image, nifti_image_write, nifti_image_write_bricks, nifti_image_infodump, nifti_disp_lib_hist, nifti_disp_lib_version, nifti_disp_matrix_orient, nifti_disp_type_list, nifti_image_to_ascii, nifti_image_from_ascii, nifti_get_volsize, nifti_set_filenames, nifti_makehdrname, nifti_makeimgname, is_nifti_file, nifti_find_file_extension, nifti_is_complete_filename, nifti_validfilename, disp_nifti_1_header, nifti_set_debug_level, nifti_set_skip_blank_ext, valid_nifti_brick_list, nifti_image_open, nifti_image_write_hdr_img, nifti_image_write_hdr_img2, nifti_read_buffer, nifti_write_all_data, nifti_write_buffer, nifti_read_ascii_image, nifti_write_ascii_image, nifti_datatype_sizes, nifti_quatern_to_mat44, nifti_make_orthog_mat44, nifti_short_order, nifti_findhdrname, nifti_findimgname, nifti_is_gzfile, nifti_makebasename, nifti_convert_nim2nhdr, nifti_make_new_header, nifti_read_header, nifti_copy_nim_info, nifti_make_new_nim, nifti_simple_init_nim, nifti_convert_nhdr2nim, nifti_hdr_looks_good, nifti_is_valid_datatype, nifti_is_valid_ecode, nifti_nim_is_valid, nifti_nim_has_valid_dims, is_valid_nifti_type, nifti_test_datatype_sizes, nifti_type_and_names_match, nifti_update_dims_from_array, nifti_set_iname_offset, nifti_set_type_from_names, nifti_add_extension, nifti_copy_extensions, nifti_free_extensions, nifti_get_intlist, nifti_strdup, valid_nifti_extensions, wrapImageDataWithArray, detachDataFromImage, allocateImageMemory, mat442array, set_mat44, new_shortp, copy_shortp, delete_shortp, shortp_assign, shortp_value, new_intp, copy_intp, delete_intp, intp_assign, intp_value, new_uintp, copy_uintp, delete_uintp, uintp_assign, uintp_value, new_floatp, copy_floatp, delete_floatp, floatp_assign, floatp_value, new_doublep, copy_doublep, delete_doublep, doublep_assign, doublep_value, new_charp, copy_charp, delete_charp, charp_assign, charp_value, shortArray_swigregister, shortArray_frompointer, intArray_swigregister, intArray_frompointer, uintArray_swigregister, uintArray_frompointer, floatArray_swigregister, floatArray_frompointer, doubleArray_swigregister, doubleArray_frompointer