PyMVPA Documentation Contents

• What is NIfTI and what do I need PyNIfTI for?
  • NIfTI
  • Python
  • PyNIfTI
  • Scripts
  • Known issues
  • Things to know

• Installation
  • Binary packages
    • GNU/Linux
    • Windows
    • MacOS X
  • Compile from source
    • Get the sources
    • Compiling: General instructions
    • Building on Windows Systems
    • MacOS X
    • MacOS X and MacPython
  • Troubleshooting

• Examples
  • Loading and saving NIfTI files
  • NIfTI files from array data
  • Select ROIs
  • Linear detrending of timeseries (SciPy module is required for this example)
  • Make a quick plot of a voxel’s timeseries (matplotlib module is required)
  • Show a slice of a 3d volume (Matplotlib module is required)
  • Compute and display peristimulus signal timecourse of multiple conditions

• Module Reference
  • Module format
    • NiftiFormat
  • Module image
    • NiftiImage
    • MemMappedNiftiImage
  • Module extensions
    • NiftiExtensions
  • Useful Functions
    • Utilities from nifti.utils
    • Image functions in nifti.imgfx

• License

• PyNIfTI Development Changelog
  • Releases